Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs1917160 chr10:88282822 T/C 2.15E-8 285 26.37 21.63 9.77 KM Plot
KIRP rs1967339 chr2:100924655 C/A 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs1967340 chr2:100924597 T/C 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs1967341 chr2:100924559 T/C 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs1977 chr6:26377546 A/G 1.04E-5 289 25.53 29.43 13.17 KM Plot
KIRP rs1979870 chr5:156481383 T/C 3.75E-6 280 12.1 22.8 26.2 KM Plot
KIRP rs1995377 chr5:156436679 T/A 1.28E-7 287 12.78 25.18 26.37 KM Plot
KIRP rs199543421 chr7:104573527 G/GCACA 0.000128 278 26.83 16.78 9 KM Plot
KIRP rs199622051 chr12:49779609 G/GT 4.54E-6 287 25.67 26.48 10.97 KM Plot
KIRP rs199695559 chr14:43860575 A/G 6.77E-6 287 26.83 23.12 11.13 KM Plot
KIRP rs199947852 chr13:45041314 CA/C 1.88E-11 282 26.37 23.63 6.17 KM Plot
KIRP rs200098490 chr10:43519061 TC/T 4.3E-5 289 25.67 25.95 11.43 KM Plot
KIRP rs2001310 chr17:80792589 G/A 2.15E-9 284 26.28 25.6 16.4 KM Plot
KIRP rs200225146 chr12:49804712 CTTTTAG/C 3.77E-6 287 25.58 37.25 10.97 KM Plot
KIRP rs200280589 chr7:20691527 ATTC/A 2.29E-5 288 25.82 22.57 11.2 KM Plot